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🦠MICROBIOLOGY KNOWLEDGE HUB 🔬
The microbiology knowledge hub was curated by research scientists at mBioWorks Copenhagen. It consists of abstracts of journal articles, book digests, and US/EU patents. The Knowledge Hub will be updated approximately 4-6 times a year.
🧫 Microbiology Journal Collections
The abstracts were retrieved from PubMed on selected, well-recognized journals in Microbiology.
Full collection: includes all articles.
Keywords match: only includes articles with matched microbe-related keywords. The keyword list includes microbe, microorganism, bacteria, fungi, yeast, virus, archaea, prokaryote, antibiotic, probiotic, antimicrobial, microbial, bacterial, fungal, algae, algal, microbiome, microbiota, pathogen, biofilm, virome, anaerobe, and extremophile.
Journal List
ACS Chemical Biology, 2006-2024, keywords match
ACS Infectious Diseases, 2014-2024, full collection
ACS Synthetic Biology, 2011-2024, keywords match
AMB Express, 2011-2024, full collection
Anaerobe, 2000-2024, full collection
Animal Microbiome, 2019-2024, full collection
Annual Review of Microbiology, 1970-2024, full collection
Antimicrobial Agents and Chemotherapy, 1970-2024, full collection
Antonie van Leeuwenhoek, 1970-2024, full collection
Applied and Environmental Microbiology, 1976-2024, full collection
Applied Microbiology and Biotechnology, 1990-2024, full collection
Archives of Microbiology, 1974-2024, full collection
Archives of Virology, 1975-2024, full collection
Biochemical Journal, 1990-2024, keywords match
Biochemistry, 1990-2024, keywords match
BioDesign Research, 2019-2024, full collection
Biofilm, 2019-2024, full collection
Bioinformatics, 2000-2024, full collection
Bioinformatics Advances, 2021-2024, full collection
Bioresource Technology, 2000-2024, keywords match
BioTechniques, 2000-2024, full collection
Biotechnology and Bioengineering, 2000-2024, full collection
Biotechnology Journal, 2006-2024, full collection
BMC Bioinformatics, 2000-2024, full collection
BMC Genomics, 2002-2024, keywords match
BMC Infectious Diseases, 2000-2024, full collection
BMC Microbiology, 2001-2024, full collection
Briefings in Bioinformatics, 2000-2024, full collection
Cell, 1974-2024, keywords match
Cell Chemical Biology, 2016-2024, full collection
Cell Genomics, 2021-2024, keywords match
Cell Host and Microbe, 2007-2024, full collection
Cell Reports, 2012-2024, keywords match
Cell Research, 2000-2024, keywords match
Cell Systems, 2015-2024, full collection
Cellular Microbiology, 1999-2024, full collection
Chemosphere, 2020-2024, keywords match
Clinical Infectious Diseases, 1992-2024, full collection
Clinical Microbiology and Infection, 1995-2024, full collection
Clinical Microbiology Reviews, 1988-2024, full collection
Communications Biology, 2018-2024, keywords match
Communications Earth and Environment, 2021-2024, keywords match
Current Biology, 1992-2024, keywords match
Current Opinion in Biotechnology, 1990-2024, keywords match
Current Opinion in Microbiology, 1998-2024, full collection
eLife, 2012-2024, keywords match
Emerging Microbes and Infections, 2012-2024, full collection
Emerging Infectious Diseases, 1995-2024, full collection
EMBO Journal, 1982-2024, keywords match
EMBO Molecular Medicine, 2009-2024, keywords match
EMBO Reports, 2000-2024, keywords match
Environment International, 2000-2024, full collection
Environmental Microbiology, 1999-2024, full collection
Environmental Microbiology Reports, 2009-2024, full collection
Environmental Microbiome, 2019-2024, full collection
Environmental Pollution, 2000-2024, full collection
Environmental Science and Technology, 1976-2024, keywords match
Environmental Science and Technology Letters, 2013-2024, full collection
Epidemiology and Infection, 2000-2024, full collection
Eukaryotic Cell, 2002-2015, full collection
European Journal of Clinical Microbiology and Infectious Diseases, 1988-2024, full collection
FEBS Letters, 1990-2024, keywords match
FEMS Microbes, 2020-2024, full collection
FEMS Microbiology Ecology, 1984-2024, full collection
FEMS Microbiology Letters, 1984-2024, full collection
FEMS Microbiology Reviews, 1984-2024, full collection
FEMS Yeast Research, 2001-2024, full collection
Food Microbiology, 2005-2024, full collection
Fungal Biology, 2009-2024, full collection
Frontiers in Bioengineering and Biotechnology, 2013-2024, full collection
Frontiers in Cellular and Infection Microbiology, 2011-2024, full collection
Frontiers in Fungal Biology, 2020-2024, full collection
Frontiers in Microbiology, 2010-2024, full collection
Gastroenterology, 1990-2024, full collection
Genome Biology, 2000-2024, keywords match
Genome Biology and Evolution, 2009-2024, keywords match
Genome Research, 1995-2024, keywords match
GigaScience, 2012-2024, full collection
Global Change Biology, 2012-2024, keywords match
Gut, 1970-2024, keywords match
Gut Microbes, 2009-2024, full collection
Harmful Algae, 2004-2024, full collection
iMeta, 2022-2024, full collection
Infection and Immunity, 1970-2024, full collection
Infectious Diseases, 2000-2024, full collection
International Journal of Antimicrobial Agents, 1991-2024, full collection
International Journal of Food Microbiology, 1988-2024, full collection
International Journal of Infectious Diseases, 2000-2024, full collection
International Journal of Parasitology, 1971-2024, full collection
International Journal of Systematic and Evolutionary Microbiology, 2000-2024, full collection
iScience, 2018-2024, digest
ISME Communications, 2021-2024, full collection
ISME Journal, 2007-2024, full collection
Journal of Applied Microbiology, 1997-2024, full collection
Journal of Applied Phycology, 2006-2024, full collection
Journal of Bacteriology, 1970-2024, full collection
Journal of Biological Chemistry, 1990-2024, keywords match
Journal of Biotechnology, 2000-2024, full collection
Journal of Clinical Microbiology, 1975-2024, full collection
Journal of Computational Biology, 2000-2024, full collection
Journal of Eukaryotic Microbiology, 1993-2024, full collection
Journal of General Virology, 1970-2024, full collection
Journal of Infectious Diseases, 1970-2024, full collection
Journal of Medical Microbiology, 1970-2024, full collection
Journal of Medical Mycology, 2009-2024, full collection
Journal of Medical Virology, 2000-2024, full collection
Journal of Microbiological Methods, 1983-2024, full collection
Journal of Oral Microbiology, 2009-2024, full collection
Journal of Phycology, 2000-2024, full collection
Journal of the American Chemical Society, 1990-2024, keywords match
Journal of the American Medical Association, 1970-2024, keywords match
Journal of Virology, 1970-2024, full collection
Journal of Virological Methods, 2000-2024, full collection
Lancet Infectious Diseases, 2001-2024, full collection
Lancet Microbe, 2020-2024, full collection
Letters in Applied Microbiology, 1990-2024, full collection
Limnology and Oceanography, 1988-2024, keywords match
mBio, 2010-2024, full collection
mLife, 2022-2024, full collectionmicroLife, 2020-2024, full collection
Medical Microbiology and Immunology, 1971-2024, full collection
Medical Mycology, 1998-2024, full collection
Methods in Enzymology, 2000-2024, full collection
Methods in Molecular Biology, 2000-2024, full collection
Microbes and Environments, 2008-2024, full collection
Microbial Biotechnology, 2008-2024, full collection
Microbial Cell Factories, 2002-2024, full collection
Microbial Ecology, 1974-2024, full collection
Microbial Genomics, 2015-2024, full collection
Microbial Pathogenesis, 2000-2024, full collection
Microbiological Research, 1994-2024, full collection
Microbiology (UK), 1994-2024, full collection
Microbiology and Molecular Biology Reviews, 1997-2024, full collection
Microbiology Spectrum, 2013-2024, full collection
Microbiome, 2013-2024, full collection
Molecular Biology and Evolution, 1990-2024, full collection
Molecular Cell, 2000-2024, keywords match
Molecular Microbiology, 1987-2024, full collection
Molecular Plant-Microbe Interactions, 2000-2024, full collection
mSphere, 2015-2024, full collection
mSystems, 2015-2024, full collection
Mycologia, 1970-2024, full collection
NAR Genomics and Bioinformatics, 2019-2024, full collection
Nature, 1970-2024, keywords match
Nature Biomedical Engineering, 2016-2024, full collection
Nature Biotechnology, 1996-2024, keywords match
Nature Cell Biology, 2000-2024, keywords match
Nature Climate Change, 2014-2024, keywords match
Nature Communications, 2010-2024, keywords match
Nature Ecology and Evolution, 2016-2024, keywords match
Nature Genetics, 1992-2024, keywords match
Nature Geoscience, 2013-2024, keywords match
Nature Medicine, 1995-2024, keywords match
Nature Methods, 2004-2024, keywords match
Nature Microbiology, 2016-2024, full collection
Nature Plants, 2015-2024, keywords match
Nature Protocols, 2006-2024, full collection
Nature Reviews Genetics, 2000-2024, digest
Nature Reviews Microbiology, 2003-2024, full collection
Nature Reviews Molecular Biology, 2000-2024, digest
npj Biofilms and Microbiomes, 2015-2024, full collection
Nucleic Acids Research, 1974-2024, keywords match
Occupational and Environmental Medicine, 2000-2024, keywords match
Parasitology, 1970-2024, full collection
Pathogens and Disease, 2012-2024, full collection
Pathogens and Global Health, 2012-2024, full collection
PLoS Biology, 2003-2024, keywords match
PLoS Computational Biology, 2005-2024, full collection
PLoS Genetics, 2005-2024, keywords match
PLoS Medicine, 2005-2024, keywords match
PLoS Neglected Tropical Diseases, 2007-2024, full collection
PLoS ONE, 2006-2024, keywords match
PLoS Pathogens, 2005-2024, full collection
PNAS, 1970-2024, keywords match
PNAS Nexus, 2022-2024, keywords match
Protist, 1998-2024, full collection
Science, 1970-2024, keywords match
Science Advances, 2015-2024, keywords match
Science of the Total Environment, 2000-2024, keywords match
Scientific Reports, 2011-2024, keywords match
Systematic and Applied Microbiology, 1983-2024, full collection
The British Medical Journal (BMJ), 1988-2024, keywords match
The FEBS Journal, 2005-2024, keywords match
The Lancet, 2001-2024, keywords match
The New England Journal of Medicine, 1970-2024, keywords match
Trends in Biotechnology, 1990-2024, keywords match
Trends in Ecology and Evolution, 1986-2024, keywords match
Trends in Microbiology, 1993-2024, full collection
Trends in Parasitology, 2001-2024, full collection
Veterinary Microbiology, 1982-2024, full collection
Virology Journal, 2004-2024, full collection
Water Research, 1990-2024, keywords match
📚 AI's Read Digests of Microbiology Books
All books were programmatically read by AI, and read digests were generated for content searching. Only "learned", digested content by AI are used in AskMicrobe's answers.
Book List
Accessing Uncultivated Microorganisms, ASM, 2008
Archaea - molecular and cellular biology, ASM, 2007
Astrobiology - an eolutionary approach, CRC, 2015
Astrobiology - understanding life in the universe, WileyBlackwell, 2015
Bacterial Biogeochemistry, Elsevier, 2012
Bacterial Physiology - a molecular approach, Springer, 2008
Bensons Microbiological Applications - laboratory manual, McGrawHill, 2017
Bioinformatic and Statistic Analysis of Microbiome Data, Springer, 2023
Brock Biology of Microorganisms, Pearson, 2021
Challenges of the Unseen World, ASM, 2018
Clinical Microbiology for Diagnostic Laboratory Scientists, Wiley, 2018
Clinical Virology Manual, ASM, 2009
Current Protocols - essential laboratory techniques, Wiley, 2008
Difco BBL Manual of Microbiological Culture Media, BD, 2009
DSMZ Medium Handbook - full collection, 2024
Encyclopedia of Astrobiology, Springer, 2015
Encyclopedia of Metagenomics, Springer, 2015
Extremophiles - from biology to biotechnology, CRC, 2018
Food Microbiology - an introduction, ASM, 2012
Geomicrobiology, CRC, 2016
Handbook of Microbiological Media, CRC, 2010
Human Parasitology, Elsevier & AP, 2019
I Microbiologist, ASM, 2010
Industrial Microbiology, Wiley, 2020
Lab Manual and Workbook in Microbiology Applications to Patient Care, McGrawHill, 2019
Manual of Environmental Microbiology, ASM, 2016
Marine Microbiology - ecology and applications, CRC, 2020
Medical Biotechnology, ASM, 2014
Medical Microbiology, Elsevier, 2021
Metagenomics for Microbiology, Elsevier, 2015
Metagenomics Methods and Protocols, Springer, 2017
Microbial Biochemistry, Springer, 2014
Microbial Ecology of the Oceans, Wiley-Blackwell, 2018
Microbiology, Pearson, 2019
Microbiology - a laboratory manual global edition, Pearson, 2018
Microbiology - basic and clinical principles, Pearson, 2019
Microbiology Fundamentals - a clinical approach, McGrawHill, 2016
Microbiology - global edition, Pearson, 2016
Microbiome Analysis Methods and Protocols, Humana, 2018
Modern Soil Microbiology, CRC, 2019
Molecular Genetics of Bacteria, ASM, 2013
Molecular Microbiology - diagnostic principles and practice, ASM, 2016
Oral Microbiology and Immunology, ASM, 2019
Polar Microbiology - live in a deep freeze, ASM, 2012
Physiology and Biochemistry of Prokaryotes, Oxford, 2012
Practical Handbook of Microbiology, CRC, 2021
Practical Guide to Diagnostic Parasitology, ASM, 2021
Sherris Ryans Medical Microbiology, McGrawHill, 2022
Soil Microbiology, Wiley, 2021
Taxonomy of Prokaryotes, Methods in Microbiology, Elsevier-AP, 2011
The Fungi, Elsevier, 2016
The New Microbiology - from microbiomes to CRISPR, ASM, 2018
Veterinary Clinical Parasitology, Wiley & Blackwell, 2021
Veterinary Microbioogy, Wiley & Blackwell, 2022
🧬 Patents on Microbes and Molecular Biology
All inventions related to microbes and molecular biology were downloaded from the Google Patent portal. This free version of AskMicrobe includes only US and European patents from the year 2000 onwards. The full text of a total of 42,972 patents is included.
Patent List
US and EU patents on microbes, 2000-2023, download the full list here (23,550 patents).
Keywords: microbe, microorganism, bacteria, fungi, yeast, virus, archaea, prokaryote, antibiotic, probiotic, antimicrobial, microbial, bacterial, fungal, algae, algal, microbiome, microbiota, pathogen, biofilm, virome, anaerobe, extremophile.
US and EU patents on molecular biology, 2000-2023, download the full list here (21,840 patents, 2,418 overlapped).
Keywords: DNA, RNA, Protein, enzyme, amino acid, nucleotide, genome, gene, chromosome, plasmid, mRNA, biomarker.
Last update: 18/09/2024
Created by mBioWorks Copenhagen
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